vizGlassbrain.RdVisualizing brain connectivity with a glass brain plot
vizGlassbrain(
data,
surf_color = "grey",
node_color = "#00BA38",
surf_alpha = 0.2,
cmap,
node_size = 8,
node_label = TRUE,
node_label_size = 10,
node_label_color = "black",
edgethickness = 8,
limits,
colorbar_title = "Connectivity strength",
orientation_labels = TRUE,
remove_brain = FALSE
)a vector of edge values with 4005, 7021, 23871 or 30135 columns
color of the cortical surface. Set to 'grey' by default
color of the nodes. Set to '#00BA38' by default
alpha value of the cortical surface, where 0 will cause the cortical surface to disappear and 1 will cause the cortical surface to be completely opaque. Set to 0.2 by default
A string vector containing 2 to 3 color names/codes specifying the colors to be used for the color scale. See RColorBrewer::display.brewer.all() for all possible cmap options. If none are specified, appropriate colors will be automatically selected according to range(surf_data)
size parameter for the dots representing the nodes. Set to 8 by default.
option to show node labels. Set to TRUE by default.
font size of the node labels. Set to 10 by default.
font color of the node labels. Set to black by default.
a value to adjust the thickness of the edges. Set to 8 by default.
A combined pair of numeric vector composed of the lower and upper color scale limits of the plot. When left unspecified, the symmetrical limits c(-max(abs(surf_dat),max(abs(surf_dat))) will be used.
title for the colorbar legend. Set to 'Connectivity strength by default
A boolean object specifying if orientation labels are to be displayed. Set to TRUE by default
A boolean object specifying cortical surface should be removed. Set to FALSE by default
outputs a plot_ly object
This function takes a vector (length(data)=number of edges in the connectome) of edge values and visualizes the edge-to-edge connectivity with a glass brain plot