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Requirements check

VWRfirstrun()
VertexWiseR system requirements installation

Surface data extraction and smoothing

HIPvextract()
HIPvextract
SURFvextract()
SURFvextract
FSLRvextract()
FSLRvextract
CAT12vextract()
CAT12vextract
smooth_surf()
Smooth surface
fs_stats()
fs_stats()

Main analysis functions

Vertex-Wise analysis

RFT_vertex_analysis()
Vertex-wise analysis with random field theory cluster correction
TFCE_vertex_analysis()
Vertex-wise analysis with threshold-free cluster enhancement (fixed effect)
TFCE_vertex_analysis_mixed()
Vertex-wise analysis with threshold-free cluster enhancement (mixed effect)
TFCE_threshold()
Thresholding TFCE output

Plotting

plot_surf()
Surface plotter
plot_surf3d()
3D Surface plotter

Other functions

Atlas manipulations

atlas_to_surf()
Atlas to surface
surf_to_atlas()
Surface to atlas

Decoding surface data

decode_surf_data()
Decode surface data

Conversions

fs5_to_fs6()
fsaverage5 to fsaverage6
fs6_to_fs5()
fsaverage6 to fsaverage5
surf_to_vol()
Surface to volume

Data objects

Object classes

MNIsurface-class
MNI surface map object
edgelist-class
Edge list object
ROImap-class
Region-of-Interest mapping object

Edges

edgelist_hip
List of edges for the hippocampal template

Template maps

fs6_to_fs5_map
fsaverage6 template object for nearest neighbor conversion in fs6_to_fs5()
hip_points_cells
points and cells data required to build the hippocampus surface template
MNImap_hip
Hippocampal surface in MNI space

Parcellation maps

ROImap_fs5
Atlas parcellations of fsaverage5
ROImap_fs6
Atlas parcellations of fsaverage6
ROImap_fslr32k
Atlas parcellations of FS_LR32k
ROImap_hip
Atlas parcellations of the hippocampus (CITI168)